Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| HNSC | rs5760216 | chr22:24539734 | G/A | 5.91E-5 | 411 | 16.27 | 18.17 | 7.07 | KM Plot |
| HNSC | rs5760220 | chr22:24542480 | C/T | 2.36E-6 | 412 | 16.3 | 17.07 | 8.63 | KM Plot |
| HNSC | rs5760229 | chr22:24560254 | C/G | 2.36E-6 | 412 | 16.3 | 17.07 | 8.63 | KM Plot |
| HNSC | rs5760233 | chr22:24564648 | G/T | 2.36E-6 | 412 | 16.3 | 17.07 | 8.63 | KM Plot |
| HNSC | rs5760234 | chr22:24566000 | C/T | 2.36E-6 | 412 | 16.3 | 17.07 | 8.63 | KM Plot |
| HNSC | rs5760236 | chr22:24572034 | G/A | 2.38E-6 | 411 | 16.3 | 18.17 | 8.63 | KM Plot |
| HNSC | rs5760247 | chr22:24592593 | C/T | 8.8E-7 | 407 | 16.5 | 14.02 | 5.68 | KM Plot |
| HNSC | rs5760252 | chr22:24598570 | C/T | 8.8E-7 | 407 | 16.43 | 14.02 | 5.68 | KM Plot |
| HNSC | rs57646360 | chr12:120886221 | C/T | 3.99E-5 | 410 | 16.47 | 17.33 | 6.23 | KM Plot |
| HNSC | rs5766346 | chr22:45436629 | C/G | 7.79E-5 | 412 | 16.97 | 15.4 | 6.8 | KM Plot |
| HNSC | rs57696204 | chr2:53473459 | T/C | 2.99E-7 | 409 | 16.28 | 16.7 | 3.57 | KM Plot |
| HNSC | rs57924617 | chr18:42806532 | G/A | 2.75E-5 | 409 | 16.92 | 13.05 | 4.3 | KM Plot |
| HNSC | rs58656226 | chr16:89745091 | T/G | 4.83E-7 | 403 | 16.27 | 16.22 | 5.33 | KM Plot |
| HNSC | rs58963750 | chr22:31015720 | C/T | 1.93E-5 | 409 | 16.43 | 15.4 | 6.75 | KM Plot |
| HNSC | rs59688847 | chr19:34374803 | G/A | 3.66E-6 | 411 | 16 | 18.93 | 5.03 | KM Plot |